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    LOC4342598 probable D-2-hydroxyglutarate dehydrogenase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342598, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342598
    Gene description
    probable D-2-hydroxyglutarate dehydrogenase, mitochondrial
    Locus tag
    OSNPB_070187200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    D2HGDH; OsJ_23376
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    Genomic context

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    See LOC4342598 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4713588..4720130)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4652784..4659160)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPM1 Neighboring gene general transcriptional corepressor CYC8-like Neighboring gene glycine-rich RNA-binding protein RZ1C Neighboring gene protein SEEDLING PLASTID DEVELOPMENT 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable D-2-hydroxyglutarate dehydrogenase, mitochondrial
    Names
    LOC_Os07g08950
    OSJNBb0084L07.2
    P0506C07.26
    putative actin interacting protein
    NP_001408936.1
    NP_001408937.1
    XP_066168057.1
    XP_066168058.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422007.1 → NP_001408936.1  probable D-2-hydroxyglutarate dehydrogenase, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CB650720, CB662073, CB670472, CB673141, CB673142, CB675607, CI441591
      UniProtKB/Swiss-Prot
      B9FVX0, Q7XI14

    2. NM_001422008.1 → NP_001408937.1  probable D-2-hydroxyglutarate dehydrogenase, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CB650720, CB662073, CB670472, CB673141, CB673142, CB675607, CI132608, CI441591
      UniProtKB/Swiss-Prot
      B9FVX0, Q7XI14

    RNA

    1. NR_185476.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CB650720, CB662073, CB666427, CB670472, CB673142, CI441591

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4713588..4720130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311961.1 → XP_066168058.1  probable D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1

    2. XM_066311960.1 → XP_066168057.1  probable D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XI14.1 GenPept UniProtKB/Swiss-Prot:Q7XI14

    Gene LinkOut

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    Research Materials