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    LOC4340708 transcription factor TGAL3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340708, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340708
    Gene description
    transcription factor TGAL3-like
    Locus tag
    OSNPB_060265400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1001_B06.18
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    Genomic context

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    See LOC4340708 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (8961435..8964657, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (8785864..8789159, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene asparagine synthetase [glutamine-hydrolyzing] 2-like Neighboring gene uncharacterized LOC107281336 Neighboring gene protein WHAT'S THIS FACTOR 1 homolog, chloroplastic Neighboring gene protein trichome birefringence-like 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGAL3-like
    Names
    Os06g0265400
    putative ocs-element binding factor
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      8961435..8964657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786621.3 → XP_015642107.1  transcription factor TGAL3-like isoform X4

      Conserved Domains (2) summary
      cd14708
      Location:235 → 287
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:319 → 394
      DOG1; Seed dormancy control

    2. XM_066311921.1 → XP_066168018.1  transcription factor TGAL3-like isoform X3

    3. XM_026026030.2 → XP_025881815.1  transcription factor TGAL3-like isoform X2

      Conserved Domains (2) summary
      cd14708
      Location:234 → 286
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:318 → 394
      DOG1; Seed dormancy control

    4. XM_066311920.1 → XP_066168017.1  transcription factor TGAL3-like isoform X1

    5. XM_066311922.1 → XP_066168019.1  transcription factor TGAL3-like isoform X5

      UniProtKB/Swiss-Prot
      Q5Z6N9
    Nucleotide Protein
    Heading Accession and Version

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