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    LOC4340573 pentatricopeptide repeat-containing protein At5g06540 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340573, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340573
    Gene description
    pentatricopeptide repeat-containing protein At5g06540
    Locus tag
    OSNPB_060231400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340573 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6964586..6966636, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6796578..6798904, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281428 Neighboring gene casparian strip membrane protein 3 Neighboring gene pentatricopeptide repeat-containing protein At5g15300 Neighboring gene protein BOBBER 1 Neighboring gene NEP1-interacting protein-like 2 Neighboring gene uncharacterized protein At5g39570

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g06540
    Names
    Os06g0231400
    P0525F01.38
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6964586..6966636 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785506.3 → XP_015640992.3  pentatricopeptide repeat-containing protein At5g06540

      UniProtKB/TrEMBL
      A3B9Y0, Q67X36
    Nucleotide Protein
    Heading Accession and Version

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