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    LOC4330000 two-component response regulator-like PRR1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330000, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330000
    Gene description
    two-component response regulator-like PRR1
    Locus tag
    OSNPB_020618200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PRR1; OsPRR1; OsJ_07546; OJ1212_C01.9; OJ1014_H03.23
    Expression
    Broad expression in leaves before flowering (RPKM 111.1), roots after flowering (RPKM 82.8) and 5 other tissues See more
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    Genomic context

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    See LOC4330000 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25052018..25055115)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24569299..24572523)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA snoR136 Neighboring gene glutaredoxin-C4, chloroplastic-like Neighboring gene H/ACA ribonucleoprotein complex subunit 3-like protein Neighboring gene transcription factor MYB57

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Murakami M, et al. Plant Cell Physiol, 2003 Nov. PMID 14634161
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator-like PRR1
    Names
    LOC_Os02g40510
    pseudo-response regulator 1
    putative timing of CAB expression 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416743.1 → NP_001403672.1  two-component response regulator-like PRR1

      Status: VALIDATED

      Source sequence(s)
      AB189038, AK111828, AP014958, CB650674, CB664831, CI581539
      UniProtKB/Swiss-Prot
      A0A0P0VLS5, Q0DZH6, Q689G9, Q6K951

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25052018..25055115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q689G9.2 GenPept UniProtKB/Swiss-Prot:Q689G9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials