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    LOC4327395 fasciclin-like arabinogalactan protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327395, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4327395
    Gene description
    fasciclin-like arabinogalactan protein 4
    Locus tag
    OSNPB_010841100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327395 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36718857..36729385, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36093765..36104384, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL36x Neighboring gene uncharacterized LOC4327393 Neighboring gene uncharacterized LOC4327394 Neighboring gene uncharacterized LOC136353928 Neighboring gene protein ESMERALDA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in abscisic acid-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mucilage biosynthetic process involved in seed coat development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multidimensional cell growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fasciclin-like arabinogalactan protein 4
    Names
    Os01g0841100
    P0408C03.33-1
    endosperm specific protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36718857..36729385 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022328.2 → XP_025878113.1  fasciclin-like arabinogalactan protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VAB1, Q5N9U4
      Conserved Domains (2) summary
      pfam02469
      Location:212 → 347
      Fasciclin; Fasciclin domain
      cl02663
      Location:44 → 152
      Fasciclin; Fasciclin domain

    2. XM_066305288.1 → XP_066161385.1  fasciclin-like arabinogalactan protein 4 isoform X2

    3. XM_066305277.1 → XP_066161374.1  fasciclin-like arabinogalactan protein 4 isoform X2

    4. XM_066305291.1 → XP_066161388.1  fasciclin-like arabinogalactan protein 4 isoform X2

    5. XM_066305287.1 → XP_066161384.1  fasciclin-like arabinogalactan protein 4 isoform X2

    6. XM_066305292.1 → XP_066161389.1  fasciclin-like arabinogalactan protein 4 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials