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    LOC4324327 transcription factor bHLH77 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324327, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324327
    Gene description
    transcription factor bHLH77
    Locus tag
    OSNPB_010915600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ta1
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    Genomic context

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    See LOC4324327 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40529208..40531915, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39894689..39897756, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cysteine proteinase inhibitor 5 Neighboring gene probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP15-1 Neighboring gene uncharacterized LOC9266868

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Li X, et al. Plant Physiol, 2006 Aug. PMID 16896230, Free PMC Article
    2. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    3. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH77
    Names
    Os01g0915600
    P0004D12.24
    bHLH transcription factor
    putative bHLH transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40529208..40531915 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766441.3 → XP_015621927.1  transcription factor bHLH77 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VC12, A0A9K3Y8C0, B8A855, Q0JGM6, Q5N802
      Conserved Domains (1) summary
      cd18919
      Location:273 → 355
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    2. XM_015766440.3 → XP_015621926.1  transcription factor bHLH77 isoform X1

      Conserved Domains (1) summary
      cd18919
      Location:273 → 355
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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