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    lrp2bp.S LRP2 binding protein S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 432223, updated on 17-Aug-2024

    Summary

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    Official Symbol
    lrp2bp.S
    Official Full Name
    LRP2 binding protein S homeolog
    Primary source
    Xenbase:XB-GENE-6078212
    Locus tag
    XELAEV_18009119mg
    See related
    EnsemblRapid:ENSXLAG00005001166
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    lrp2bp
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    Genomic context

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    See lrp2bp.S in Genome Data Viewer
    Location:
    chromosome: 1S
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (33627101..33645798)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (33450648..33468963)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene ufm1-specific protease 2-like Neighboring gene ankyrin repeat domain 37 S homeolog Neighboring gene protein kinase C delta type-like Neighboring gene protein kinase C delta type-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC83482

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LRP2-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091675.1 → NP_001085144.1  LRP2-binding protein

      See identical proteins and their annotated locations for NP_001085144.1

      Status: PROVISIONAL

      Source sequence(s)
      BC072346
      UniProtKB/Swiss-Prot
      Q6IND7
      UniProtKB/TrEMBL
      A0A974I054
      Related
      ENSXLAP00005003547.1, ENSXLAT00005003609.1
      Conserved Domains (4) summary
      smart00671
      Location:205 → 239
      SEL1; Sel1-like repeats
      COG0790
      Location:52 → 270
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:106 → 142
      SLR; SLR repeat [structural motif]
      pfam08238
      Location:131 → 165
      Sel1; Sel1 repeat

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      33627101..33645798
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041574977.1 → XP_041430911.1  LRP2-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8J1LP20, A0A974I054
      Related
      ENSXLAP00005003553.1, ENSXLAT00005003615.1
      Conserved Domains (2) summary
      COG0790
      Location:52 → 270
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:106 → 142
      SLR; SLR repeat [structural motif]

    2. XM_041574988.1 → XP_041430922.1  LRP2-binding protein isoform X2

      UniProtKB/TrEMBL
      A0A8J1LN15, A0A974I054
      Conserved Domains (2) summary
      COG0790
      Location:30 → 248
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:84 → 120
      SLR; SLR repeat [structural motif]

    3. XM_041574987.1 → XP_041430921.1  LRP2-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8J1LP20, A0A974I054
      Conserved Domains (2) summary
      COG0790
      Location:52 → 270
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:106 → 142
      SLR; SLR repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6IND7.1 GenPept UniProtKB/Swiss-Prot:Q6IND7

    Gene LinkOut

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