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    KDM4B lysine demethylase 4B [ Gallus gallus (chicken) ]

    Gene ID: 428354, updated on 17-Aug-2024

    Summary

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    Symbol
    KDM4Bprovided by CGNC
    Full Name
    lysine demethylase 4Bprovided by CGNC
    Primary source
    CGNC:3001
    See related
    Ensembl:ENSGALG00010027292
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    JMJD2B
    Orthologs
    human mouse all
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    Genomic context

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    See KDM4B in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (5197113..5275240, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (4759167..4837307, complement)

    Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, receptor type S Neighboring gene microRNA 6666 Neighboring gene uncharacterized LOC107055377 Neighboring gene uncharacterized LOC124417447 Neighboring gene uncharacterized LOC121107763 Neighboring gene ubiquitin like with PHD and ring finger domains 1 Neighboring gene perilipin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Histone demethylase KDM4B regulates otic vesicle invagination via epigenetic control of Dlx3 expression. Uribe RA, et al. J Cell Biol, 2015 Nov 23. PMID 26598618, Free PMC Article
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. KDM4B plays a critical role during inner ear invagination via modulating histone methylation of the direct target Dlx3.
      Title: Histone demethylase KDM4B regulates otic vesicle invagination via epigenetic control of Dlx3 expression.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 4B
    Names
    jumonji domain containing 2B
    lysine (K)-specific demethylase 4B
    XP_015155667.3
    XP_015155668.3
    XP_015155672.3
    XP_040509761.2
    XP_040548930.2
    XP_040548931.2
    XP_040548933.2
    XP_040548934.2
    XP_046760686.1
    XP_046789965.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5197113..5275240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015300186.4 → XP_015155672.3  lysine-specific demethylase 4B isoform X5

      Related
      ENSGALP00010040445.1, ENSGALT00010066179.1

    2. XM_015300182.4 → XP_015155668.3  lysine-specific demethylase 4B isoform X3

    3. XM_015300181.4 → XP_015155667.3  lysine-specific demethylase 4B isoform X2

      Related
      ENSGALP00010040444.1, ENSGALT00010066178.1

    4. XM_046904730.1 → XP_046760686.1  lysine-specific demethylase 4B isoform X1

    5. XM_040653827.2 → XP_040509761.2  lysine-specific demethylase 4B isoform X4

      Related
      ENSGALP00010040443.1, ENSGALT00010066177.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4759167..4837307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040693000.2 → XP_040548934.2  lysine-specific demethylase 4B isoform X5

    2. XM_040692997.2 → XP_040548931.2  lysine-specific demethylase 4B isoform X3

    3. XM_040692996.2 → XP_040548930.2  lysine-specific demethylase 4B isoform X2

    4. XM_046934009.1 → XP_046789965.1  lysine-specific demethylase 4B isoform X1

    5. XM_040692999.2 → XP_040548933.2  lysine-specific demethylase 4B isoform X4

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039322.1: Suppressed sequence

      Description
      NM_001039322.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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