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    scpr-C SCP-containing protein C [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41348, updated on 2-Nov-2024

    Summary

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    Official Symbol
    scpr-Cprovided by FlyBase
    Official Full Name
    SCP-containing protein Cprovided by FlyBase
    Primary source
    FLYBASE:FBgn0037879
    Locus tag
    Dmel_CG5106
    See related
    AllianceGenome:FB:FBgn0037879
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BEST:CK01680; cg5106; CG5106; Dmel\CG5106; scp-C; Scpr-C; SCPR-C
    Summary
    Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in adult head. Orthologous to human R3HDML (R3H domain containing like) and PI15 (peptidase inhibitor 15). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See scpr-C in Genome Data Viewer
    Location:
    86D8-86D8; 3-50 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (11225520..11226681)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (7051242..7052403)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Ribosomal protein L3 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene GRIP and coiled-coil domain containing 88 kDa Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic imprinting absent in Drosophila melanogaster adult females. Coolon JD, et al. Cell Rep, 2012 Jul 26. PMID 22840398, Free PMC Article
    2. Human BOULE gene rescues meiotic defects in infertile flies. Xu EY, et al. Hum Mol Genet, 2003 Jan 15. PMID 12499397
    3. Molecular evolution and population genetic analysis of candidate female reproductive genes in Drosophila. Panhuis TM, et al. Genetics, 2006 Aug. PMID 16783023, Free PMC Article
    4. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Begun DJ, et al. PLoS Biol, 2007 Nov 6. PMID 17988176, Free PMC Article
    5. Protease gene duplication and proteolytic activity in Drosophila female reproductive tracts. Kelleher ES, et al. Mol Biol Evol, 2009 Sep. PMID 19546158, Free PMC Article

    See all (32) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in multicellular organismal reproductive process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SCP-containing protein C
    Names
    CG5106-PA
    CG5106-PB
    SCP-Related-C
    scpr-C-PA
    scpr-C-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      11225520..11226681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300353.1 → NP_001287282.1  SCP-containing protein C, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287282.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GTC5, Q8T3W8, Q9VGR3
      Conserved Domains (1) summary
      cd05380
      Location:58 → 210
      SCP_euk; SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed ...

    2. NM_141796.2 → NP_650053.1  SCP-containing protein C, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650053.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GTC5, Q8T3W8, Q9VGR3
      Related
      FBpp0081827
      Conserved Domains (1) summary
      cd05380
      Location:58 → 210
      SCP_euk; SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8T3W8 Q8T3W8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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