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    Tco025E_08371 putative vacuolar protein sorting-associated protein 41 [ Trypanosoma conorhini ]

    Gene ID: 40321982, updated on 21-Dec-2023

    Summary

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    Gene symbol
    Tco025E_08371
    Gene description
    putative vacuolar protein sorting-associated protein 41
    Locus tag
    Tco025E_08371
    Gene type
    protein coding
    RNA name
    putative vacuolar protein sorting-associated protein 41
    RefSeq status
    PROVISIONAL
    Organism
    Trypanosoma conorhini (strain: 025E, nat-host: Rattus rattus, culture-collection: TCC/USP:025E)
    Lineage
    Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma
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    Genomic context

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    See Tco025E_08371 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_021704853.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene PIF1 helicase-like protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021704853.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence. Bradwell KR, et al. BMC Genomics, 2018 Oct 24. PMID 30355302, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative vacuolar protein sorting-associated protein 41

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_021704853.1 Reference assembly

      Range
      2948..5017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029375221.1 → XP_029224673.1  putative vacuolar protein sorting-associated protein 41 [Trypanosoma conorhini]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3R7N986
      Conserved Domains (2) summary
      pfam00637
      Location:297 → 420
      Clathrin; Region in Clathrin and VPS
      pfam00646
      Location:598 → 642
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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