myo1c.S myosin IC S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: myo1c.S
Official Full Name: myosin IC S homeolog
Primary source: Xenbase:XB-GENE-6254925
Locus tag: XELAEV_18014581mg
See related: EnsemblRapid:ENSXLAG00005032016
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: nm1; mmib; myr2; myo1c; MMIb-A; myo1c-a; myo1c-b; MMI-beta-A
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Genomic context

Location:: chromosome: 2S

Exon count:: 33

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (36470453..36579327)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (34169704..34278322)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

XlMyo1c couples polymerizing actin to membranes and so mediates force production during compensatory endocytosis.
Title: Myosin-1c couples assembling actin to membranes to drive compensatory endocytosis.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables actin binding	IEA Inferred from Electronic Annotation more info
enables actin filament binding	IEA Inferred from Electronic Annotation more info
enables cytoskeletal motor activity	IEA Inferred from Electronic Annotation more info
enables microfilament motor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within actin filament organization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within vesicle transport along actin filament	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in actin cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cell projection	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in microvillus	IEA Inferred from Electronic Annotation more info
part_of myosin complex	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in stereocilium membrane	IEA Inferred from Electronic Annotation more info
located_in vesicle	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: unconventional myosin-Ic-A

Names: Myosin I beta-A; Myosin-Ic-A; myosin-1c; nuclear myosin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089984.1 → NP_001083453.1 unconventional myosin-Ic-A

See identical proteins and their annotated locations for NP_001083453.1

Status: PROVISIONAL

Source sequence(s)

BC060477

UniProtKB/TrEMBL

A0A974DHG8

Related

ENSXLAP00005096410.1, ENSXLAT00005098185.1

Conserved Domains (3) summary

smart00242
Location:8 → 696

MYSc; Myosin. Large ATPases

cd01378
Location:27 → 683

MYSc_Myo1; class I myosin, motor domain

pfam06017
Location:839 → 1006

Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding