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    tes.L testin LIM domain protein L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380398, updated on 18-Sep-2024

    Summary

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    Official Symbol
    tes.L
    Official Full Name
    testin LIM domain protein L homeolog
    Primary source
    Xenbase:XB-GENE-6253774
    Locus tag
    XELAEV_18017635mg
    See related
    EnsemblRapid:ENSXLAG00005026178
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tes; tess; tess-2
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    Genomic context

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    See tes.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (74607803..74625062)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (59288822..59308094)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly factor 5-like Neighboring gene transcription factor EC L homeolog Neighboring gene caveolin 2 L homeolog Neighboring gene caveolin 1 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tes regulates neural crest migration and axial elongation in Xenopus. Dingwell KS, et al. Dev Biol, 2006 May 1. PMID 16554046
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Prickle and tes act together to control axial elongation.
      Title: Tes regulates neural crest migration and axial elongation in Xenopus.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Clone Names

    • MGC53173

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within neural crest cell migration IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in anchoring junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cell cortex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testin
    Names
    testis derived transcript (3 LIM domains)
    xtes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      74607803..74625062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041586399.1 → XP_041442333.1  testin

      UniProtKB/Swiss-Prot
      Q7ZXE9
      UniProtKB/TrEMBL
      A0A1L8GYW8, A0A974DDI7
      Related
      ENSXLAP00005077895.1, ENSXLAT00005079486.1
      Conserved Domains (4) summary
      cd09413
      Location:236 → 293
      LIM1_Testin; The first LIM domain of Testin
      cd09416
      Location:299 → 354
      LIM2_Testin; The second LIM domain of Testin
      cd09419
      Location:361 → 419
      LIM3_Testin; The third LIM domain of Testin
      cd09829
      Location:109 → 195
      PET_testin; The PET domain of Testin

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001087237.1: Suppressed sequence

      Description
      NM_001087237.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7ZXE9.1 GenPept UniProtKB/Swiss-Prot:Q7ZXE9

    Gene LinkOut

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