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    taf8.S TATA-box binding protein associated factor 8 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380201, updated on 4-Nov-2024

    Summary

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    Official Symbol
    taf8.S
    Official Full Name
    TATA-box binding protein associated factor 8 S homeolog
    Primary source
    Xenbase:XB-GENE-6253923
    Locus tag
    XELAEV_18014884mg
    See related
    EnsemblRapid:ENSXLAG00005001925 AllianceGenome:Xenbase:XB-GENE-6253923
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tbn; taf8
    Summary
    Predicted to enable protein heterodimerization activity. Predicted to act upstream of or within cell differentiation and transcription initiation at RNA polymerase II promoter. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF8 (TATA-box binding protein associated factor 8). [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See taf8.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (59947196..59970663, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (55898175..55921680, complement)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene ciliary microtubule associated protein 3 S homeolog Neighboring gene chitinase 1 (chitotriosidase) S homeolog Neighboring gene bystin like S homeolog Neighboring gene mediator complex subunit 20 S homeolog Neighboring gene provisional ortholog of predicted gene 15246 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC53761

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription factor TFIID complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 8
    Names
    TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa
    TBP-associated factor 8
    taube nuss

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087040.1 → NP_001080509.1  transcription initiation factor TFIID subunit 8

      See identical proteins and their annotated locations for NP_001080509.1

      Status: PROVISIONAL

      Source sequence(s)
      BC043877
      UniProtKB/Swiss-Prot
      Q7ZYA2
      Related
      ENSXLAP00005005819.1, ENSXLAT00005005925.1
      Conserved Domains (2) summary
      cd08049
      Location:134 → 187
      TAF8; TATA Binding Protein (TBP) Associated Factor 8
      pfam07524
      Location:22 → 96
      Bromo_TP; Bromodomain associated

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      59947196..59970663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7ZYA2.1 GenPept UniProtKB/Swiss-Prot:Q7ZYA2

    Gene LinkOut

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