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    Ccdc15 coiled-coil domain containing 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 367056, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc15provided by RGD
    Official Full Name
    coiled-coil domain containing 15provided by RGD
    Primary source
    RGD:1305591
    See related
    EnsemblRapid:ENSRNOG00000039390 AllianceGenome:RGD:1305591
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be active in centrosome. Orthologous to human CCDC15 (coiled-coil domain containing 15). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 60.5), Testes (RPKM 48.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc15 in Genome Data Viewer
    Location:
    8q22
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (45165297..45257641, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (36991147..37068849, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (39759077..39830235, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 218 Neighboring gene solute carrier family 37 member 2 Neighboring gene transfer RNA proline (anticodon AGG) 64 Neighboring gene uncharacterized LOC120094115 Neighboring gene hepatic and glial cell adhesion molecule Neighboring gene roundabout guidance receptor 4 Neighboring gene roundabout guidance receptor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. Jakobsen L, et al. EMBO J, 2011 Apr 20. PMID 21399614, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 15
    Names
    solute carrier family 37 (glycerol-3-phosphate transporter), member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191912.2 → NP_001178841.1  coiled-coil domain-containing protein 15

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      D3ZRD2
      Related
      ENSRNOP00000109612.1, ENSRNOT00000173703.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      45165297..45257641 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242815.5 → XP_006242877.2  coiled-coil domain-containing protein 15 isoform X1

      See identical proteins and their annotated locations for XP_006242877.2

      Conserved Domains (1) summary
      PTZ00121
      Location:594 → 708
      PTZ00121; MAEBL; Provisional

    2. XM_017596006.3 → XP_017451495.1  coiled-coil domain-containing protein 15 isoform X3

    3. XM_017596005.3 → XP_017451494.1  coiled-coil domain-containing protein 15 isoform X2

      Conserved Domains (1) summary
      PTZ00121
      Location:593 → 707
      PTZ00121; MAEBL; Provisional

    4. XM_008766078.4 → XP_008764300.1  coiled-coil domain-containing protein 15 isoform X1

      See identical proteins and their annotated locations for XP_008764300.1

      Related
      ENSRNOP00000051521.6, ENSRNOT00000040901.8
      Conserved Domains (1) summary
      PTZ00121
      Location:594 → 708
      PTZ00121; MAEBL; Provisional

    5. XM_039082303.2 → XP_038938231.1  coiled-coil domain-containing protein 15 isoform X4

      Conserved Domains (1) summary
      PTZ00121
      Location:386 → 500
      PTZ00121; MAEBL; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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