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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029020.1 RefSeqGene
- Range
-
5074..14432
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001319077.2 → NP_001306006.1 high mobility group protein HMG-I/HMG-Y isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) uses an alternate splice site in the 5' UTR and uses an alternate in-frame splice site compared to variant 1. It encodes isoform b (also called HMG-Y), which is shorter than isoform a. Variants 2, 4, 5, 7, and 8 encode the same isoform (b).
- Source sequence(s)
-
AL354740, BC008832, DA049639, M23616
- Consensus CDS
-
CCDS4788.1
- UniProtKB/TrEMBL
-
Q5T6U8
-
NM_001319078.2 → NP_001306007.1 high mobility group protein HMG-I/HMG-Y isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) lacks an exon in the 5' UTR compared to variant 1. Variants 1, 3, 9, 10, 12, and 13 encode isoform (a, also called HMG-I).
- Source sequence(s)
-
AL354740, BC008832, BC063434, DA049639
- Consensus CDS
-
CCDS4789.1
- UniProtKB/Swiss-Prot
- P10910, P17096, Q5T6U9, Q9UKB0
-
NM_001319079.2 → NP_001306008.1 high mobility group protein HMG-I/HMG-Y isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) uses an alternate splice site in the 5' UTR compared to variant 1. Variants 1, 3, 9, 10, 12, and 13 encode isoform (a, also called HMG-I).
- Source sequence(s)
-
AL354740, BC008832, DA467015
- Consensus CDS
-
CCDS4789.1
- UniProtKB/Swiss-Prot
- P10910, P17096, Q5T6U9, Q9UKB0
-
NM_001319080.2 → NP_001306009.1 high mobility group protein HMG-I/HMG-Y isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (11) uses an alternate in-frame splice site compard to variant 1. The encoded isoform (c) is shorter than isoform a.
- Source sequence(s)
-
AL354740, BC008832, DA049639, DA936387
- Consensus CDS
-
CCDS93895.1
- UniProtKB/TrEMBL
-
A0A994J434
- Related
- ENSP00000515486.1, ENST00000703808.1
-
NM_001319081.2 → NP_001306010.1 high mobility group protein HMG-I/HMG-Y isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (13) uses an alternate splice site and lacks an exon in the 5' UTR compared to variant 1. Variants 1, 3, 9, 10, 12, and 13 encode isoform (a, also called HMG-I).
- Source sequence(s)
-
AL354740, BC008832, CX785762, DA049639
- Consensus CDS
-
CCDS4789.1
- UniProtKB/Swiss-Prot
- P10910, P17096, Q5T6U9, Q9UKB0
-
NM_001319082.2 → NP_001306011.1 high mobility group protein HMG-I/HMG-Y isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (12) uses an alternate splice site in the 5' UTR compared to variant 1. Variants 1, 3, 9, 10, 12, and 13 encode isoform (a, also called HMG-I).
- Source sequence(s)
-
AL354740, BC008832, BE269847, DB029421
- Consensus CDS
-
CCDS4789.1
- UniProtKB/Swiss-Prot
- P10910, P17096, Q5T6U9, Q9UKB0
-
NM_002131.4 → NP_002122.1 high mobility group protein HMG-I/HMG-Y isoform b
See identical proteins and their annotated locations for NP_002122.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site compared to variant 1, resulting in a shorter isoform (b, also called HMG-Y) than isoform a. Variants 2, 4, 5, 7, and 8 encode the same isoform (b).
- Source sequence(s)
-
AL354740, BC004924, BC008832, DA049639
- Consensus CDS
-
CCDS4788.1
- UniProtKB/TrEMBL
-
Q5T6U8
- Related
- ENSP00000385693.2, ENST00000401473.7
-
NM_145899.3 → NP_665906.1 high mobility group protein HMG-I/HMG-Y isoform a
See identical proteins and their annotated locations for NP_665906.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a, also called HMG-I). Variants 1, 3, 9, 10, 12, and 13 encode isoform (a).
- Source sequence(s)
-
AL354740, BC008832, DA049639
- Consensus CDS
-
CCDS4789.1
- UniProtKB/Swiss-Prot
- P10910, P17096, Q5T6U9, Q9UKB0
- Related
- ENSP00000308227.4, ENST00000311487.9
-
NM_145901.3 → NP_665908.1 high mobility group protein HMG-I/HMG-Y isoform a
See identical proteins and their annotated locations for NP_665908.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 3, 9, 10, 12, and 13 encode isoform (a, also called HMG-I).
- Source sequence(s)
-
AL354740, BC008832, DA574958, DC374225, M23614
- Consensus CDS
-
CCDS4789.1
- UniProtKB/Swiss-Prot
- P10910, P17096, Q5T6U9, Q9UKB0
- Related
- ENSP00000399888.1, ENST00000447654.5
-
NM_145902.3 → NP_665909.1 high mobility group protein HMG-I/HMG-Y isoform b
See identical proteins and their annotated locations for NP_665909.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and uses an alternate in-frame splice site compared to variant 1. It encodes isoform b (also called HMG-Y), which is shorter than isoform a. Variants 2, 4, 5, 7, and 8 encode the same isoform (b).
- Source sequence(s)
-
AL354740, BC008832, DA574958, DC374225, M23615
- Consensus CDS
-
CCDS4788.1
- UniProtKB/TrEMBL
-
Q5T6U8
-
NM_145903.3 → NP_665910.1 high mobility group protein HMG-I/HMG-Y isoform b
See identical proteins and their annotated locations for NP_665910.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an exon in the 5' UTR and uses an alternate in-frame splice site compared to variant 1. It encodes isoform b (also called HMG-Y), which is shorter than isoform a. Variants 2, 4, 5, 7, and 8 encode the same isoform (b).
- Source sequence(s)
-
AL354740, BC008832, DC338100, M23617
- Consensus CDS
-
CCDS4788.1
- UniProtKB/TrEMBL
-
Q5T6U8
- Related
- ENSP00000288245.9, ENST00000347617.10
-
NM_145905.3 → NP_665912.1 high mobility group protein HMG-I/HMG-Y isoform b
See identical proteins and their annotated locations for NP_665912.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR and uses an alternate in-frame splice site compared to variant 1. It encodes isoform b (also called HMG-Y), which is shorter than isoform a. Variants 2, 4, 5, 7, and 8 encode the same isoform (b).
- Source sequence(s)
-
AL354740, BC008832, BC015789
- Consensus CDS
-
CCDS4788.1
- UniProtKB/TrEMBL
-
Q5T6U8
- Related
- ENSP00000363230.3, ENST00000374116.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
34236873..34246231
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
34060576..34069936
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_145904.1: Suppressed sequence
- Description
- NM_145904.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.