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    CG12535 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31311, updated on 10-May-2024

    Summary

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    Official Symbol
    CG12535provided by FlyBase
    Primary source
    FLYBASE:FBgn0029657
    Locus tag
    Dmel_CG12535
    See related
    AllianceGenome:FB:FBgn0029657
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG12535
    Orthologs
    all
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    Genomic context

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    See CG12535 in Genome Data Viewer
    Location:
    3D2-3D3; 1-3 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (3387944..3448943, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (3281977..3342976, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene dunce Neighboring gene long non-coding RNA:CR44886 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR46243 Neighboring gene long non-coding RNA:CR44999 Neighboring gene transfer RNA:Glutamine-TTG 2-1 Neighboring gene Myc Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Epistatic partners of neurogenic genes modulate Drosophila olfactory behavior. He X, et al. Genes Brain Behav, 2016 Feb. PMID 26678546, Free PMC Article
    2. Frequent Somatic Mutation in Adult Intestinal Stem Cells Drives Neoplasia and Genetic Mosaicism during Aging. Siudeja K, et al. Cell Stem Cell, 2015 Dec 3. PMID 26607382, Free PMC Article
    3. Patterns of sequence variability and divergence at the diminutive gene region of Drosophila melanogaster: complex patterns suggest an ancestral selective sweep. Jensen JD, et al. Genetics, 2007 Oct. PMID 17720938, Free PMC Article
    4. A Genome-Wide Screen for Dendritically Localized RNAs Identifies Genes Required for Dendrite Morphogenesis. Misra M, et al. G3 (Bethesda), 2016 Aug 9. PMID 27260999, Free PMC Article
    5. A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands. Pauli A, et al. Curr Biol, 2010 Oct 26. PMID 20933422, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    mobile_element

    • Loc: c3404436-3404265 mobile_element_type = transposon:S2{}1885
    • Loc: c3421199-3415073 mobile_element_type = transposon:3S18{}35
    • Loc: c3428848-3428708 mobile_element_type = transposon:gypsy{}1877

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG12535-PB
    CG12535-PC
    CG12535-PD
    CG12535-PE
    CG12535-PF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      3387944..3448943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001297909.1 → NP_001284838.1  uncharacterized protein Dmel_CG12535, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001284838.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRU2

    2. NM_130699.2 → NP_570055.2  uncharacterized protein Dmel_CG12535, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_570055.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRU2

    3. NM_166972.2 → NP_726860.1  uncharacterized protein Dmel_CG12535, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726860.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRU2
      Related
      FBpp0070509

    4. NM_001272276.1 → NP_001259205.1  uncharacterized protein Dmel_CG12535, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259205.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRU2

    5. NM_001272277.1 → NP_001259206.1  uncharacterized protein Dmel_CG12535, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259206.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRU2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IRU2 Q8IRU2

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