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    GVI51_J10483 uncharacterized protein [ Nakaseomyces glabratus ]

    Gene ID: 2889613, updated on 19-Jun-2024

    Summary

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    Gene symbol
    GVI51_J10483
    Gene description
    uncharacterized protein
    Locus tag
    GVI51_J10483
    See related
    FungiDB:GVI51_J10483; VEuPathDB:GVI51_J10483
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Nakaseomyces glabratus (strain: ATCC 2001, nat-host: Homo sapiens, culture-collection: ATCC:2001, type-material: type material of Cryptococcus glabratus)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces
    Old locus tag
    CAGL0J10670g
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    Genomic context

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    See GVI51_J10483 in Genome Data Viewer
    Location:
    chromosome: J
    Exon count:
    2
    Sequence:
    Chromosome: J; NC_088960.1 (1086445..1089882)

    Chromosome J - NC_088960.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_088960.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Xu Z, et al. Mol Microbiol, 2020 Jun. PMID 32068314
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    • CAGL0J10670g
      Ortholog(s) have role in DNA recombination, nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay and cytosol, polysome localization

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    XP_448175.1
    • CAGL0J10670g
      Ortholog(s) have role in DNA recombination, nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay and cytosol, polysome localization

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_088960.1 Reference assembly

      Range
      1086445..1089882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_448175.1 → XP_448175.1  uncharacterized protein GVI51_J10483 [Nakaseomyces glabratus]

      See identical proteins and their annotated locations for XP_448175.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0W0DB81, Q6FNL9
      Conserved Domains (2) summary
      smart00543
      Location:372 → 553
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:957 → 1077
      Upf2; Up-frameshift suppressor 2
    Nucleotide Protein
    Heading Accession and Version

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