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    SAPIO_CDS8203 Carboxy-cis,cis-muconate cyclase [ Scedosporium apiospermum ]

    Gene ID: 27727275, updated on 17-May-2024

    Summary

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    Gene symbol
    SAPIO_CDS8203
    Gene description
    Carboxy-cis,cis-muconate cyclase
    Locus tag
    SAPIO_CDS8203
    See related
    FungiDB:SAPIO_CDS8203; VEuPathDB:SAPIO_CDS8203
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Scedosporium apiospermum (strain: IHEM 14462, nat-host: Homo sapiens)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Microascales; Microascaceae; Scedosporium
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    Genomic context

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    See SAPIO_CDS8203 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    6

    NW_015971822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ESCRT-II complex subunit Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015971822.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft Genome Sequence of the Pathogenic Fungus Scedosporium apiospermum. Vandeputte P, et al. Genome Announc, 2014 Oct 2. PMID 25278533, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA double-strand break attachment to nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul8-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Carboxy-cis,cis-muconate cyclase
    XP_016640154.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_015971822.1 Reference assembly

      Range
      480283..484935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016789891.1 → XP_016640154.1  Carboxy-cis,cis-muconate cyclase [Scedosporium apiospermum]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A084FZ43
      Conserved Domains (5) summary
      smart00292
      Location:477 → 550
      BRCT; breast cancer carboxy-terminal domain
      pfam00533
      Location:379 → 455
      BRCT; BRCA1 C Terminus (BRCT) domain
      pfam10282
      Location:5 → 297
      Lactonase; Lactonase, 7-bladed beta-propeller
      pfam12738
      Location:712 → 773
      PTCB-BRCT; twin BRCT domain
      cl00038
      Location:980 → 1083
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
    Nucleotide Protein
    Heading Accession and Version

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