U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RHTO_06477 leucine-trna ligase [ Rhodotorula toruloides NP11 ]

    Gene ID: 27370490, updated on 3-Jan-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RHTO_06477
    Gene description
    leucine-trna ligase
    Locus tag
    RHTO_06477
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rhodotorula toruloides NP11 (strain: NP11)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Microbotryomycetes; Sporidiobolales; Sporidiobolaceae; Rhodotorula
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RHTO_06477 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    6

    NW_015623001.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene choline transporter Neighboring gene uncharacterized protein Neighboring gene DUF3140 family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_015623001.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides. Zhu Z, et al. Nat Commun, 2012. PMID 23047670, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables leucine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leucyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    leucine-trna ligase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_015623001.1 Reference assembly

      Range
      66110..69868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016420138.1 → XP_016269453.1  leucine-trna ligase [Rhodotorula toruloides NP11]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A061BE33, A0A0K3CMW6, G0SVY7, M7X3V9
      Conserved Domains (4) summary
      cd07959
      Location:800 → 922
      Anticodon_Ia_Leu_AEc; Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases
      cd00812
      Location:572 → 802
      LeuRS_core; catalytic core domain of leucyl-tRNA synthetases
      PLN02959
      Location:22 → 1116
      PLN02959; aminoacyl-tRNA ligase
      cl00015
      Location:77 → 245
      nt_trans; nucleotidyl transferase superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases