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    RNU2-2P RNA, U2 small nuclear 2, pseudogene [ Homo sapiens (human) ]

    Gene ID: 26855, updated on 19-Sep-2024

    Summary

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    Official Symbol
    RNU2-2Pprovided by HGNC
    Official Full Name
    RNA, U2 small nuclear 2, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:10152
    See related
    AllianceGenome:HGNC:10152
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U2; RNU2B; RNU2-2
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    Genomic context

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    See RNU2-2P in Genome Data Viewer
    Location:
    11q12.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62841623..62841761, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62831020..62831158, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (62609095..62609233, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene syntaxin 5 Neighboring gene RNA, U6 small nuclear 118, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4852 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4854 Neighboring gene STX5 divergent transcript Neighboring gene testis expressed 54 Neighboring gene WD repeat domain 74 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4855 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4859 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3432 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62608631-62609244 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62609245-62609858 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62609859-62610472 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4862 Neighboring gene small nucleolar RNA, C/D box 22 Neighboring gene small nucleolar RNA host gene 1 Neighboring gene small nucleolar RNA, C/D box 31

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PanCancer analysis of somatic mutations in repetitive regions reveals recurrent mutations in snRNA U2. Bousquets-Muñoz P, et al. NPJ Genom Med, 2022 Mar 14. PMID 35288589, Free PMC Article
    2. Mg2+ induces a sharp and reversible transition in U1 and U2 small nuclear ribonucleoprotein configurations. Reveillaud I, et al. Mol Cell Biol, 1984 Sep. PMID 6238232, Free PMC Article
    3. The association of UBAP2L and G3BP1 mediated by small nucleolar RNA is essential for stress granule formation. Asano-Inami E, et al. Commun Biol, 2023 Apr 14. PMID 37059803, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • RNA, U2B small nuclear

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_044735.1 

      Range
      101..239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      62841623..62841761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      62831020..62831158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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