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    L1 capsid protein precursor pIIIa;encapsidation protein 52K;protein 13.6K [ Human mastadenovirus C ]

    Gene ID: 2652993, updated on 6-Jun-2024

    Summary

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    Gene symbol
    L1
    Gene description
    capsid protein precursor pIIIa;encapsidation protein 52K;protein 13.6K
    Locus tag
    HAdVC_gp10
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Human mastadenovirus C (serotype: Human adenovirus 2, acronym: HAdV-2, acronym: HAdV-C, nat-host: Homo sapiens)
    Lineage
    Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus
    Old locus tag
    HAdVCgp12
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    Genomic context

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    Sequence:
    NC_001405.1 (6008..14113)

    NC_001405.1Genomic Context describing neighboring genes Neighboring gene control protein E1A;control protein E1A 243R Neighboring gene control protein E1B 19K;control protein E1B 55K Neighboring gene encapsidation protein IVa2 Neighboring gene capsid protein IX Neighboring gene DNA polymerase;terminal protein precursor pTP Neighboring gene core protein V;core protein precursor pVII;core protein precursor pX;penton base Neighboring gene capsid protein precursor pVI;hexon;protease Neighboring gene capsid protein precursor pVIII;encapsidation protein 22K;hexon assembly protein 100K;protein 33K Neighboring gene fiber Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene single-stranded DNA-binding protein Neighboring gene Neighboring gene control protein E3 12.5K;membrane glycoprotein E3 CR1-alpha;membrane glycoprotein E3 CR1-beta;membrane glycoprotein E3 gp19K Neighboring gene control protein E3 14.7K;membrane protein E3 RID-alpha;membrane protein E3 RID-beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001405.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Processing of the l1 52/55k protein by the adenovirus protease: a new substrate and new insights into virion maturation. Pérez-Berná AJ, et al. J Virol, 2014 Feb. PMID 24227847, Free PMC Article
    2. Human adenovirus species C recombinant virus continuously circulated in China. Yang J, et al. Sci Rep, 2019 Jul 5. PMID 31278296, Free PMC Article
    3. Phylogenetic evidence for intratypic recombinant events in a novel human adenovirus C that causes severe acute respiratory infection in children. Wang Y, et al. Sci Rep, 2016 Mar 10. PMID 26960434, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The L1 52/55k protein is is the seventh substrate for L3.
      Title: Processing of the l1 52/55k protein by the adenovirus protease: a new substrate and new insights into virion maturation.
    Submit: New GeneRIF Correction

    General gene information

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    prim_transcript

    • Loc: 6039-14113 experiment = transcript mapping

    regulatory

    • Loc: 14092-14097 regulatory_class = polyA_signal_sequence
    • Loc: 6008-6013 regulatory_class = TATA_box

    General protein information

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    Preferred Names
    capsid protein precursor pIIIa;encapsidation protein 52K;protein 13.6K
    NP_040517.2
    • genus-specific
    NP_040519.1
    • genus-common

    VOG classification

    Description:

    • VOGd0010 [A] Late 52/55 kDa protein (involved in virion assembly)
    • Auxilary Proteins
    NP_040520.1
    • genus-common

    VOG classification

    Description:

    • VOGd0011 [S] Peripentonal hexon-associated protein IIIA
    • Structural Proteins

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001405.1 Reference assembly

      Range
      6008..14113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_040517.2 protein 13.6K [Human mastadenovirus C]

      See identical proteins and their annotated locations for NP_040517.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P03263
      UniProtKB/TrEMBL
      A0A2H4PJ73, A0A7L4WGC9, A0A7L4WHF5, A0A7L4WJZ2, A0A7L4WKS1, A0AAF0YZH8, A0AAF0Z322
      Conserved Domains (1) summary
      pfam03052
      Location:34 → 139
      Adeno_52K; Adenoviral protein L1 52/55-kDa

    2. NP_040519.1 encapsidation protein 52K [Human mastadenovirus C]

      See identical proteins and their annotated locations for NP_040519.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P03262
      UniProtKB/TrEMBL
      A0A0U4XAQ4, A0A0U5BLR5, A0A1U9ALL5, A0A2H4PJ58, A0A3G8W6I4, A0A3Q9HJF2, A0A3Q9HJI1, A0A3Q9HL15, A0A3Q9HL81, A0A3Q9HLK4, A0A3S9SN66, A0A3S9SPA2, A0A3S9SPL5, A0A5J6SFW4, A0A5K6WDP0, A0A6M5E0J5, A0A7D6TSN6, A0A7L4WGW9, A0AAF0YSZ8, A0AAF0YVK3, A0AAF0Z030, A0AAF1BW97, E1U5N3, J7I7H6, J9Z3H1, J9Z410, Q71BX5
      Conserved Domains (1) summary
      pfam03052
      Location:68 → 269
      Adeno_52K; Adenoviral protein L1 52/55-kDa

    3. NP_040520.1 capsid protein precursor pIIIa [Human mastadenovirus C]

      See identical proteins and their annotated locations for NP_040520.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P03279
      UniProtKB/TrEMBL
      A0A2H4PJ71, A0A3Q9HJH1, A0A3Q9HKH9, A0A5J6SGN0, A0A5J6SIA2, A0A5S9LCZ7, A8D0L3, J9Z3D9, T1UF17
      Conserved Domains (1) summary
      pfam02455
      Location:72 → 582
      Hex_IIIa; Hexon-associated protein (IIIa)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    AAA92207.1
    AAA92209.1
    AAA92210.1

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