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    LOC25501519 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [ Medicago truncatula (barrel medic) ]

    Gene ID: 25501519, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25501519
    Gene description
    putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial
    Locus tag
    MtrunA17_Chr8g0368871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (32193504..32194178)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (29734562..29735329)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g21880, mitochondrial-like Neighboring gene non-specific lipid transfer protein GPI-anchored 15 Neighboring gene putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial Neighboring gene histone-lysine N-methyltransferase family member SUVH9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial
    Names
    pentatricopeptide (PPR) repeat protein
    putative tetratricopeptide-like helical domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      32193504..32194178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013590761.3 → XP_013446215.1  putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial

      UniProtKB/TrEMBL
      A0A072TS48
      Conserved Domains (4) summary
      TIGR00756
      Location:81 → 115
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:47 → 74
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:4 → 24
      PPR_1; PPR repeat
      pfam13041
      Location:43 → 91
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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