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    LOC25492466 protein SODIUM POTASSIUM ROOT DEFECTIVE 3 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25492466, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25492466
    Gene description
    protein SODIUM POTASSIUM ROOT DEFECTIVE 3
    Locus tag
    MtrunA17_Chr4g0030661
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25492466 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (31365404..31367353)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (23207710..23209657)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35 Neighboring gene 5'-3' exoribonuclease 3-like Neighboring gene dirigent protein 9 Neighboring gene dirigent protein 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SODIUM POTASSIUM ROOT DEFECTIVE 3
    Names
    heavy-metal-associated domain protein
    putative heavy metal-associated domain, HMA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      31365404..31367353
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013600607.3 → XP_013456061.2  protein SODIUM POTASSIUM ROOT DEFECTIVE 3

      UniProtKB/TrEMBL
      A0A396I5K9
      Conserved Domains (1) summary
      pfam00403
      Location:215 → 262
      HMA; Heavy-metal-associated domain
    Nucleotide Protein
    Heading Accession and Version

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