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    LOC25491065 agamous-like MADS-box protein AGL80 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25491065, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25491065
    Gene description
    agamous-like MADS-box protein AGL80
    Locus tag
    MtrunA17_Chr3g0107351
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25491065 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (30991386..30991784, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (27536363..27536761, complement)

    Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL80 Neighboring gene agamous-like MADS-box protein AGL80 Neighboring gene uncharacterized LOC25491066 Neighboring gene uncharacterized LOC120579597

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agamous-like MADS-box protein AGL80
    Names
    MADS-box transcription factor family protein
    putative transcription factor MADS-type1 family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      30991386..30991784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013604980.1 → XP_013460434.1  agamous-like MADS-box protein AGL80

      UniProtKB/TrEMBL
      A0A072UY27, A0A396IQL1
      Conserved Domains (1) summary
      cl00109
      Location:4 → 55
      MADS; MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ ...
    Nucleotide Protein
    Heading Accession and Version

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