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    sec6102 translocon subunit Sec61-like protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540769, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sec6102
    Official Full Name
    translocon subunit Sec61-like protein
    Primary source
    PomBase:SPBC19G7.17
    Locus tag
    SPOM_SPBC19G7.17
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPBC36B7.01
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    Genomic context

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    See sec6102 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003423.3 (2382450..2384668)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene nucleoporin Nup44 Neighboring gene ncRNA Neighboring gene TOM complex subunit Tom5 Neighboring gene ncRNA Neighboring gene transcription elongation factor complex subunit Iws1 Neighboring gene ncRNA Neighboring gene ER to Golgi ceramide transport protein, lipocalin superfamily Svf2 Neighboring gene ncRNA Neighboring gene translocation subcomplex subunit Sec63

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1. Kilchert C, et al. Cell Rep, 2015 Dec 22. PMID 26670050, Free PMC Article
    2. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables protein transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ribosome binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables signal sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in post-translational protein targeting to membrane, translocation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein insertion into ER membrane IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    part_of Sec61 translocon complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    translocon subunit Sec61-like protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2382450..2384668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021890.3 → NP_595983.2  translocon subunit Sec61-like protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595983.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O42965, Q9HGN9
      Conserved Domains (3) summary
      PTZ00219
      Location:3 → 465
      PTZ00219; Sec61 alpha subunit; Provisional
      pfam00344
      Location:77 → 453
      SecY; SecY translocase
      pfam10559
      Location:41 → 73
      Plug_translocon; Plug domain of Sec61p
    Nucleotide Protein
    Heading Accession and Version

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