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    H257_01507 GTP-binding protein LepA [ Aphanomyces astaci ]

    Gene ID: 20803503, updated on 17-May-2024

    Summary

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    Gene symbol
    H257_01507
    Gene description
    GTP-binding protein LepA
    Locus tag
    H257_01507
    See related
    FungiDB:H257_01507; VEuPathDB:H257_01507
    Gene type
    protein coding
    RNA name
    GTP-binding protein LepA
    RefSeq status
    PROVISIONAL
    Organism
    Aphanomyces astaci (strain: APO3)
    Lineage
    Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Aphanomyces
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    15

    NW_009798265.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene TIGR01456 family HAD hydrolase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009798265.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mitochondrial ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    GTP-binding protein LepA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_009798265.1 Reference assembly

      Range
      1739065..1742119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009824760.1 → XP_009823062.1  GTP-binding protein LepA [Aphanomyces astaci]

      See identical proteins and their annotated locations for XP_009823062.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      W4HAB2
      Conserved Domains (6) summary
      cd01890
      Location:52 → 232
      LepA; LepA also known as Elongation Factor 4 (EF4)
      PRK05433
      Location:49 → 646
      PRK05433; GTP-binding protein LepA; Provisional
      cd03709
      Location:449 → 528
      lepA_C; lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits ...
      pfam06421
      Location:536 → 646
      LepA_C; GTP-binding protein LepA C-terminus
      cd03699
      Location:240 → 325
      EF4_II; Domain II of Elongation Factor 4 (EF4)
      cd16260
      Location:341 → 416
      EF4_III; Domain III of Elongation Factor 4 (EF4)
    Nucleotide Protein
    Heading Accession and Version

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