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    VDAG_10028 WD repeat domain phosphoinositide-interacting protein [ Verticillium dahliae VdLs.17 ]

    Gene ID: 20711491, updated on 14-Dec-2023

    Summary

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    Gene symbol
    VDAG_10028
    Gene description
    WD repeat domain phosphoinositide-interacting protein
    Locus tag
    VDAG_10028
    Gene type
    protein coding
    RNA name
    WD repeat domain phosphoinositide-interacting protein
    RefSeq status
    PROVISIONAL
    Organism
    Verticillium dahliae VdLs.17 (strain: VdLs.17)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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    Genomic context

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    See VDAG_10028 in Genome Data Viewer
    Location:
    chromosome: 4, map: unlocalized
    Exon count:
    3

    NW_009276933.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene leucine carboxyl methyltransferase Neighboring gene pps1 dual specificty phosphatase Neighboring gene DDHD domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009276933.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,5-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in fungal-type vacuole membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat domain phosphoinositide-interacting protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_009276933.1 Reference assembly

      Range
      240918..242514
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009655785.1 → XP_009654080.1  WD repeat domain phosphoinositide-interacting protein [Verticillium dahliae VdLs.17]

      See identical proteins and their annotated locations for XP_009654080.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2J8FAR5, G2XIP6
      Conserved Domains (3) summary
      COG2319
      Location:7 → 197
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:126 → 164
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:3 → 196
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Protein Accession Links
    GenPept Link UniProtKB Link
    EGY20399.1

    Gene LinkOut

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    Molecular Biology Databases