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    AURANDRAFT_61626 hypothetical protein [ Aureococcus anophagefferens ]

    Gene ID: 20223546, updated on 28-Dec-2023

    Summary

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    Gene symbol
    AURANDRAFT_61626
    Gene description
    hypothetical protein
    Locus tag
    AURANDRAFT_61626
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Aureococcus anophagefferens (strain: CCMP1984)
    Lineage
    Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_008705563.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008705563.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Gobler CJ, et al. Proc Natl Acad Sci U S A, 2011 Mar 15. PMID 21368207, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-aspartic acid 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-aspartic acid hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008705563.1 Reference assembly

      Range
      842255..844791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009035404.1 → XP_009033652.1  hypothetical protein AURANDRAFT_61626 [Aureococcus anophagefferens]

      See identical proteins and their annotated locations for XP_009033652.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F0Y0S6
      Conserved Domains (3) summary
      sd00006
      Location:190 → 223
      TPR; TPR repeat [structural motif]
      pfam05118
      Location:569 → 741
      Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
      pfam13414
      Location:157 → 207
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version

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