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    LOC18443222 E3 ubiquitin-protein ligase RFWD3 [ Amborella trichopoda ]

    Gene ID: 18443222, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18443222
    Gene description
    E3 ubiquitin-protein ligase RFWD3
    Locus tag
    AMTR_s00032p00200780
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18443222 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499897.1 (3709981..3739773)

    NW_006499897.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18443215 Neighboring gene E3 ubiquitin-protein ligase RFWD3 Neighboring gene uncharacterized LOC18443223 Neighboring gene protein pxr1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006499897.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in interstrand cross-link repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RFWD3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006499897.1 Reference AMTR1.0 Primary Assembly

      Range
      3709981..3739773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006853414.3 → XP_006853476.2  E3 ubiquitin-protein ligase RFWD3 isoform X1

      Conserved Domains (2) summary
      pfam13639
      Location:132 → 181
      zf-RING_2; Ring finger domain
      cl23720
      Location:198 → 278
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    2. XM_020672774.1 → XP_020528433.1  E3 ubiquitin-protein ligase RFWD3 isoform X2

      Conserved Domains (2) summary
      cd16450
      Location:130 → 181
      mRING-C3HGC3_RFWD3; Modified RING finger, C3HGC3-type, found in RING finger and WD repeat domain-containing protein 3 (RFWD3) and similar proteins
      cl23720
      Location:198 → 281
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    RNA

    1. XR_002282403.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases