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    LOC18428996 WD repeat domain-containing protein 83 [ Amborella trichopoda ]

    Gene ID: 18428996, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18428996
    Gene description
    WD repeat domain-containing protein 83
    Locus tag
    AMTR_s00340p00012500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18428996 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497630.1 (12924..24598, complement)

    NW_006497630.1Genomic Context describing neighboring genes Neighboring gene CRS2-associated factor 2, mitochondrial Neighboring gene uncharacterized LOC110006810 Neighboring gene fasciclin-like arabinogalactan protein 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006497630.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat domain-containing protein 83

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006497630.1 Reference AMTR1.0 Primary Assembly

      Range
      12924..24598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020664109.1 → XP_020519768.1  WD repeat domain-containing protein 83

      UniProtKB/TrEMBL
      W1P026
      Conserved Domains (2) summary
      cd00200
      Location:13 → 298
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:64 → 100
      7WD40; WD40 repeat [structural motif]

    2. XM_006838289.3 → XP_006838352.1  WD repeat domain-containing protein 83

      See identical proteins and their annotated locations for XP_006838352.1

      UniProtKB/TrEMBL
      W1P026
      Conserved Domains (2) summary
      cd00200
      Location:13 → 298
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:64 → 100
      7WD40; WD40 repeat [structural motif]

    RNA

    1. XR_002280087.1 RNA Sequence

    2. XR_002280086.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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