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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001204371.2 → NP_001191300.1 kappa-type opioid receptor isoform 1
See identical proteins and their annotated locations for NP_001191300.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes two isoforms, which result from the use of alternative in-frame translation termination codons. The shorter isoform (1) results from translation termination at the upstream UGA stop codon, while the longer isoform (1x) results from UGA stop codon readthrough to the downstream UGA termination codon. This RefSeq represents the shorter isoform (1). Variants 1 and 2 encode the same isoform.
- Source sequence(s)
-
AC124029
- Consensus CDS
-
CCDS14809.1
- UniProtKB/Swiss-Prot
-
P33534
- UniProtKB/TrEMBL
-
Q14AL5
- Related
- ENSMUSP00000027038.5, ENSMUST00000027038.11
- Conserved Domains (2) summary
-
- pfam00001
Location:76 → 330
- 7tm_1; 7 transmembrane receptor (rhodopsin family)
- cl21561
Location:70 → 312
- 7tm_4; Olfactory receptor
-
NM_001318735.1 → NP_001305664.1 kappa-type opioid receptor isoform 1x
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes two isoforms, which result from the use of alternative in-frame translation termination codons. The shorter isoform (1) results from translation termination at the upstream UGA stop codon, while the longer isoform (1x) results from UGA stop codon readthrough to the downstream UGA termination codon. This RefSeq represents the longer, C-terminally extended isoform (1x). As the UGA stop codon has been reported to specify several alternative amino acids (tryptophan, cysteine, arginine and serine), the location of the upstream UGA stop codon in the longer isoform is denoted by an 'X'.
- Source sequence(s)
-
AC124029, AK136866, BB079154, L11065, S81111
- Consensus CDS
-
CCDS87811.1
- UniProtKB/TrEMBL
-
A0A5F8MP90
- Conserved Domains (2) summary
-
- pfam00001
Location:76 → 330
- 7tm_1; 7 transmembrane receptor (rhodopsin family)
- cl21561
Location:70 → 312
- 7tm_4; Olfactory receptor
-
NM_011011.3 → NP_035141.1 kappa-type opioid receptor isoform 1
See identical proteins and their annotated locations for NP_035141.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate acceptor splice site in the 5' non-coding region and has a shorter 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AC124029
- Consensus CDS
-
CCDS14809.1
- UniProtKB/Swiss-Prot
-
P33534
- UniProtKB/TrEMBL
-
Q14AL5
- Related
- ENSMUSP00000125105.2, ENSMUST00000160777.8
- Conserved Domains (2) summary
-
- pfam00001
Location:76 → 330
- 7tm_1; 7 transmembrane receptor (rhodopsin family)
- cl21561
Location:70 → 312
- 7tm_4; Olfactory receptor
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000067.7 Reference GRCm39 C57BL/6J
- Range
-
5658673..5676357
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006495470.1 → XP_006495533.1 kappa-type opioid receptor isoform X1
- Conserved Domains (2) summary
-
- cd14964
Location:5 → 31
- 7tm_GPCRs; TM helix 2 [structural motif]
- cl28897
Location:1 → 252
- 7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily