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    LOC18045333 transcription factor bHLH137 [ Citrus x clementina ]

    Gene ID: 18045333, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18045333
    Gene description
    transcription factor bHLH137
    Locus tag
    CICLE_v10031873mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Citrus x clementina
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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    Genomic context

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    See LOC18045333 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262274.1 (13751501..13754710, complement)

    NW_006262274.1Genomic Context describing neighboring genes Neighboring gene formin-J Neighboring gene sialyltransferase-like protein 2 Neighboring gene small nucleolar RNA R71 Neighboring gene poly(A) polymerase I

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006262274 Unplaced Scaffold Reference Citrus_clementina_v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH137

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Citrus_clementina_v1.0

    Genomic

    1. NW_006262274.1 Reference Citrus_clementina_v1.0

      Range
      13751501..13754710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006436866.2 → XP_006436929.1  transcription factor bHLH137

      See identical proteins and their annotated locations for XP_006436929.1

      UniProtKB/TrEMBL
      V4VCV7
      Conserved Domains (2) summary
      smart00353
      Location:195 → 244
      HLH; helix loop helix domain
      pfam04081
      Location:139 → 214
      DNA_pol_delta_4; DNA polymerase delta, subunit 4

    RNA

    1. XR_002905888.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases