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    LOC17895122 ethylene-responsive transcription factor ERF020 [ Capsella rubella ]

    Gene ID: 17895122, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC17895122
    Gene description
    ethylene-responsive transcription factor ERF020
    Locus tag
    CARUB_v10022408mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17895122 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238922.1 (10432521..10433246)

    NW_006238922.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g71490 Neighboring gene uncharacterized LOC17894763 Neighboring gene probable serine/threonine-protein kinase At1g09600 Neighboring gene lysine histidine transporter-like 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238922 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF020

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238922.1 Reference Caprub1_0

      Range
      10432521..10433246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006301873.2 → XP_006301935.1  ethylene-responsive transcription factor ERF020

      See identical proteins and their annotated locations for XP_006301935.1

      UniProtKB/TrEMBL
      R0IDS0
      Conserved Domains (1) summary
      smart00380
      Location:14 → 81
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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