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    LOC17892409 galacturonokinase [ Capsella rubella ]

    Gene ID: 17892409, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC17892409
    Gene description
    galacturonokinase
    Locus tag
    CARUB_v10013782mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17892409 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (3408549..3412917, complement)

    NW_006238921.1Genomic Context describing neighboring genes Neighboring gene trichohyalin Neighboring gene DNA gyrase subunit A, chloroplastic/mitochondrial Neighboring gene putative pectinesterase/pectinesterase inhibitor 24 Neighboring gene probable pectinesterase/pectinesterase inhibitor 25

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238921 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables galactokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in galactose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galacturonokinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238921.1 Reference Caprub1_0

      Range
      3408549..3412917 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006297685.2 → XP_006297747.1  galacturonokinase

      See identical proteins and their annotated locations for XP_006297747.1

      UniProtKB/TrEMBL
      R0HYJ2
      Conserved Domains (3) summary
      PLN02865
      Location:1 → 423
      PLN02865; galactokinase
      pfam08544
      Location:314 → 379
      GHMP_kinases_C; GHMP kinases C terminal
      pfam10509
      Location:23 → 60
      GalKase_gal_bdg; Galactokinase galactose-binding signature
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases