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    LOC17889989 MADS-box protein SOC1 [ Capsella rubella ]

    Gene ID: 17889989, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC17889989
    Gene description
    MADS-box protein SOC1
    Locus tag
    CARUB_v10024046mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17889989 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (14008311..14011913, complement)

    NW_006238920.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase complex subunit SAP18 Neighboring gene agamous-like MADS-box protein AGL6 Neighboring gene lysophospholipid acyltransferase LPEAT2 Neighboring gene transcription factor TCP9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238920 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MADS-box protein SOC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238920.1 Reference Caprub1_0

      Range
      14008311..14011913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023784064.1 → XP_023639832.1  MADS-box protein SOC1

      UniProtKB/TrEMBL
      R0FYN5
      Conserved Domains (2) summary
      cd00265
      Location:3 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:87 → 170
      K-box; K-box region

    2. XM_006294916.2 → XP_006294978.1  MADS-box protein SOC1

      See identical proteins and their annotated locations for XP_006294978.1

      UniProtKB/TrEMBL
      R0FYN5
      Conserved Domains (2) summary
      cd00265
      Location:3 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:87 → 170
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version

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