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    LOC17879686 probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [ Capsella rubella ]

    Gene ID: 17879686, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC17879686
    Gene description
    probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
    Locus tag
    CARUB_v10004565mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17879686 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238917.1 (17090531..17093411)

    NW_006238917.1Genomic Context describing neighboring genes Neighboring gene 14-3-3-like protein GF14 psi Neighboring gene ubiquitin receptor RAD23d Neighboring gene cytokinin hydroxylase Neighboring gene S-protein homolog 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238917 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238917.1 Reference Caprub1_0

      Range
      17090531..17093411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006283451.2 → XP_006283513.1  probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase

      See identical proteins and their annotated locations for XP_006283513.1

      UniProtKB/TrEMBL
      R0F4T3
      Conserved Domains (1) summary
      pfam03155
      Location:49 → 508
      Alg6_Alg8; ALG6, ALG8 glycosyltransferase family
    Nucleotide Protein
    Heading Accession and Version

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