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    COCSUDRAFT_31896 ubiquitin-conjugating enzyme [ Coccomyxa subellipsoidea C-169 ]

    Gene ID: 17035966, updated on 28-Dec-2023

    Summary

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    Gene symbol
    COCSUDRAFT_31896
    Gene description
    ubiquitin-conjugating enzyme
    Locus tag
    COCSUDRAFT_31896
    Gene type
    protein coding
    RNA name
    ubiquitin-conjugating enzyme
    RefSeq status
    PROVISIONAL
    Organism
    Coccomyxa subellipsoidea C-169 (strain: C-169)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa
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    Genomic context

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    Exon count:
    4

    NW_005178014.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ALG6, ALG8 glycosyltransferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005178014.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Blanc G, et al. Genome Biol, 2012 May 25. PMID 22630137, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    ubiquitin-conjugating enzyme

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_005178014.1 Reference assembly

      Range
      92253..94321 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005642505.1 → XP_005642562.1  ubiquitin-conjugating enzyme [Coccomyxa subellipsoidea C-169]

      See identical proteins and their annotated locations for XP_005642562.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      I0YHZ9
      Conserved Domains (2) summary
      COG5078
      Location:13 → 157
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      cl00154
      Location:13 → 157
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein
    Heading Accession and Version

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