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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001077361.2 → NP_001070829.1 four and a half LIM domains protein 1 isoform 1
See identical proteins and their annotated locations for NP_001070829.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AL671998
- Consensus CDS
-
CCDS40981.1
- UniProtKB/TrEMBL
-
A2AEY2
- Related
- ENSMUSP00000110417.3, ENSMUST00000114769.9
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001077362.3 → NP_001070830.1 four and a half LIM domains protein 1 isoform 2
See identical proteins and their annotated locations for NP_001070830.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents the use of an alternate promoter, differs in the 5' and 3' UTRs and lacks an exon in the 3' coding region resulting in a translational frameshift compared to variant 1. The encoded protein (isoform 2) has a longer N-terminus, a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL671998
- Consensus CDS
-
CCDS40980.1
- UniProtKB/TrEMBL
- A2AEX6, A2AEX8
- Related
- ENSMUSP00000110420.3, ENSMUST00000114772.9
- Conserved Domains (5) summary
-
- cd09344
Location:56 → 109
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:233 → 296
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:117 → 174
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:178 → 230
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:21 → 49
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001287800.2 → NP_001274729.1 four and a half LIM domains protein 1 isoform 3
See identical proteins and their annotated locations for NP_001274729.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) represents the use of an alternate promoter, differs in the 5' and 3' UTRs and lacks an exon in the 3' coding region resulting in a translational frameshift compared to variant 1. The encoded protein (isoform 3, also known as KyoT1) has a distinct C-terminus and is shorter than isoform 1. Variants 3 and 4 encode the same protein.
- Source sequence(s)
-
AL671998
- Consensus CDS
-
CCDS30148.1
- UniProtKB/Swiss-Prot
- O55181, P97447, Q8K318
- UniProtKB/TrEMBL
-
A2AEX6
- Related
- ENSMUSP00000110421.4, ENSMUST00000114773.10
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001412079.1 → NP_001399008.1 four and a half LIM domains protein 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL671998
- UniProtKB/TrEMBL
-
A2AEY2
-
NM_001412080.1 → NP_001399009.1 four and a half LIM domains protein 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL671998
- UniProtKB/TrEMBL
-
A2AEY2
-
NM_001412081.1 → NP_001399010.1 four and a half LIM domains protein 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL671998
- UniProtKB/TrEMBL
-
A2AEY2
-
NM_001412082.1 → NP_001399011.1 four and a half LIM domains protein 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AL671998
- UniProtKB/Swiss-Prot
- O55181, P97447, Q8K318
- Related
- ENSMUSP00000112295.2, ENSMUST00000116596.8
-
NM_001412083.1 → NP_001399012.1 four and a half LIM domains protein 1 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AL671998
-
NM_001412084.1 → NP_001399013.1 four and a half LIM domains protein 1 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AL671998
-
NM_001412085.1 → NP_001399014.1 four and a half LIM domains protein 1 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AL671998
- UniProtKB/TrEMBL
-
A2AEX7
- Related
- ENSMUSP00000110416.4, ENSMUST00000114768.10
-
NM_001412086.1 → NP_001399015.1 four and a half LIM domains protein 1 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AL671998
-
NM_001412087.1 → NP_001399016.1 four and a half LIM domains protein 1 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AL671998
-
NM_001412088.1 → NP_001399017.1 four and a half LIM domains protein 1 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AL671998
-
NM_010211.4 → NP_034341.2 four and a half LIM domains protein 1 isoform 3
See identical proteins and their annotated locations for NP_034341.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' and 3' UTRs and lacks an exon in the 3' coding region resulting in a translational frameshift compared to variant 1. The encoded protein (isoform 3, also known as KyoT1) has a distinct C-terminus and is shorter than isoform 1. Variants 3 and 4 encode the same protein.
- Source sequence(s)
-
AL671998
- Consensus CDS
-
CCDS30148.1
- UniProtKB/Swiss-Prot
- O55181, P97447, Q8K318
- UniProtKB/TrEMBL
-
A2AEX6
- Related
- ENSMUSP00000023854.4, ENSMUST00000023854.10
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000086.8 Reference GRCm39 C57BL/6J
- Range
-
55776569..55838704
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030251223.2 → XP_030107083.1 four and a half LIM domains protein 1 isoform X3
- UniProtKB/Swiss-Prot
- O55181, P97447, Q8K318
- UniProtKB/TrEMBL
-
A2AEX6
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_030251225.2 → XP_030107085.1 four and a half LIM domains protein 1 isoform X5
- Conserved Domains (3) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_006527805.3 → XP_006527868.1 four and a half LIM domains protein 1 isoform X1
See identical proteins and their annotated locations for XP_006527868.1
- UniProtKB/TrEMBL
-
A2AEY2
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_006527807.2 → XP_006527870.2 four and a half LIM domains protein 1 isoform X4
- UniProtKB/TrEMBL
-
A2AEY1
- Related
- ENSMUSP00000116725.2, ENSMUST00000144600.8
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_006527804.2 → XP_006527867.1 four and a half LIM domains protein 1 isoform X1
See identical proteins and their annotated locations for XP_006527867.1
- UniProtKB/TrEMBL
-
A2AEY2
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers