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    LOC133491831 E3 ubiquitin-protein ligase CBL-like [ Syngnathoides biaculeatus (alligator pipefish) ]

    Gene ID: 133491831, updated on 10-Apr-2024

    Summary

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    Gene symbol
    LOC133491831
    Gene description
    E3 ubiquitin-protein ligase CBL-like
    See related
    EnsemblRapid:ENSSBIG00005017638
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Syngnathoides biaculeatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathoides
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    Genomic context

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    See LOC133491831 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_12 current ASM1980259v1 (GCF_019802595.1) 18 NC_084657.1 (13171356..13183841, complement)

    Chromosome 18 - NC_084657.1Genomic Context describing neighboring genes Neighboring gene hepatic and glial cell adhesion molecule-like Neighboring gene transmembrane protein 120Aa Neighboring gene alkB homolog 4, lysine demthylase Neighboring gene leucine-rich repeats and WD repeat domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_084657.1 Chromosome 18 Reference ASM1980259v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SH3 domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphotyrosine residue binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables receptor tyrosine kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane raft IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase CBL-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_019802595.1-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1980259v1 Primary Assembly

    Genomic

    1. NC_084657.1 Reference ASM1980259v1 Primary Assembly

      Range
      13171356..13183841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061803476.1 → XP_061659460.1  E3 ubiquitin-protein ligase CBL-like

      Related
      ENSSBIP00005033802.1, ENSSBIT00005037670.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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