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    sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Phyllopteryx taeniolatus (common seadragon) ]

    Gene ID: 133466864, updated on 29-Mar-2024

    Summary

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    Gene symbol
    sgcd
    Gene description
    sarcoglycan, delta (dystrophin-associated glycoprotein)
    See related
    EnsemblRapid:ENSPTLG00010013380
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phyllopteryx taeniolatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Phyllopteryx
    Orthologs
    human zebrafish all
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    Genomic context

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    See sgcd in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_12 current UOR_Ptae_1.2 (GCF_024500385.1) 17 NC_084518.1 (18717218..18889032, complement)

    Chromosome 17 - NC_084518.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem (nuclear organelle) associated protein 5 Neighboring gene family with sequence similarity 114 member A2 Neighboring gene CCR4-NOT transcription complex, subunit 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_084518.1 Chromosome 17 Reference UOR_Ptae_1.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_024500385.1-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UOR_Ptae_1.2 Primary Assembly

    Genomic

    1. NC_084518.1 Reference UOR_Ptae_1.2 Primary Assembly

      Range
      18717218..18889032 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061750987.1 → XP_061606971.1  delta-sarcoglycan isoform X2

    2. XM_061750988.1 → XP_061606972.1  delta-sarcoglycan isoform X2

    3. XM_061750989.1 → XP_061606973.1  delta-sarcoglycan isoform X2

    4. XM_061750984.1 → XP_061606968.1  delta-sarcoglycan isoform X2

    5. XM_061750986.1 → XP_061606970.1  delta-sarcoglycan isoform X2

    6. XM_061750991.1 → XP_061606975.1  delta-sarcoglycan isoform X2

    7. XM_061750990.1 → XP_061606974.1  delta-sarcoglycan isoform X2

    8. XM_061750985.1 → XP_061606969.1  delta-sarcoglycan isoform X2

      Related
      ENSPTLP00010029738.1, ENSPTLT00010032950.1

    9. XM_061750993.1 → XP_061606977.1  delta-sarcoglycan isoform X2

    10. XM_061750992.1 → XP_061606976.1  delta-sarcoglycan isoform X2

    11. XM_061750995.1 → XP_061606979.1  delta-sarcoglycan isoform X3

      Related
      ENSPTLP00010029733.1, ENSPTLT00010032945.1

    12. XM_061750982.1 → XP_061606966.1  delta-sarcoglycan isoform X1

      Related
      ENSPTLP00010029727.1, ENSPTLT00010032939.1

    13. XM_061750996.1 → XP_061606980.1  delta-sarcoglycan isoform X4

    Nucleotide Protein
    Heading Accession and Version

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