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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001111051.2 → NP_001104521.1 serine/threonine-protein kinase DCLK1 isoform 2
See identical proteins and their annotated locations for NP_001104521.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2, also known as DCLK-short-A, DCK-beta2, KIAA0369-BL or cpg16 (candidate plasticity gene 16)] is produced from the 3' promoter. It lacks several 5' exons but has an alternate 5' exon, as compared to variant 5. The resulting isoform (2) has a shorter and different N-terminus, and lacks doublecortin domains, as compared to isoform 5.
- Source sequence(s)
-
AC115945, AF155821, BF467198, BY123015
- UniProtKB/TrEMBL
- A0A0G2JE54, Q9JLM6
- Related
- ENSMUSP00000142637.2, ENSMUST00000198412.5
- Conserved Domains (2) summary
-
- smart00220
Location:83 → 340
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cd14183
Location:76 → 343
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001111052.2 → NP_001104522.1 serine/threonine-protein kinase DCLK1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3, also known as DCLK-short-B, DCK-beta1 or KIAA0369-BS ) is produced from the 3' promoter. It lacks several 5' exons but has an alternate 5' exon, and has an additional exon in the 3' CDS that results in a frameshift, as compared to variant 5. The resulting isoform (3) has shorter and different N- and C-termini, and lacks doublecortin domains, as compared to isoform 5.
- Source sequence(s)
-
AC115945, BF467198
- Consensus CDS
-
CCDS50910.1
- UniProtKB/TrEMBL
- A0A0G2JGH1, H7BX36
- Related
- ENSMUSP00000070292.5, ENSMUST00000070418.9
- Conserved Domains (2) summary
-
- smart00220
Location:83 → 340
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cd14183
Location:76 → 343
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001111053.2 → NP_001104523.1 serine/threonine-protein kinase DCLK1 isoform 4
See identical proteins and their annotated locations for NP_001104523.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4, also known as DCL (PMID: 17313568)) is produced from the 5' promoter. It lacks several 3' exons but has an alternate 3' exon, as compared to variant 5. The resulting isoform (4) has a shorter and distinct C-terminus, and lacks a serine/proline-rich domain and a protein kinase domain, as compared to isoform 5.
- Source sequence(s)
-
AC111132, AC115945, AK147831, BC050903, CJ241697
- Consensus CDS
-
CCDS50909.1
- UniProtKB/TrEMBL
- Q3UGP0, Q80VB6, Q8VDT3
- Related
- ENSMUSP00000129334.2, ENSMUST00000167204.8
- Conserved Domains (2) summary
-
- cd17069
Location:182 → 265
- DCX2; Dublecortin-like domain 2
- cd17140
Location:55 → 143
- DCX1_DCLK1; Dublecortin-like domain 1 found in doublecortin-like kinase 1 (DCLK1)
-
NM_001195538.2 → NP_001182467.1 serine/threonine-protein kinase DCLK1 isoform 5
See identical proteins and their annotated locations for NP_001182467.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5, also known as DCLK-long-A, DCK-alpha2, KIAA0369-AL, DCAMKL1 or zyg8) is produced from the 5' promoter. It encodes isoform 5, which includes two doublecortin domains, a serine/proline-rich domain and a protein kinase domain.
- Source sequence(s)
-
AC104099, AC111132, AC115945, BF467198
- UniProtKB/TrEMBL
- A3KN70, Q8CHG1
- Conserved Domains (3) summary
-
- smart00220
Location:390 → 647
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- smart00537
Location:52 → 142
- DCX; Domain in the Doublecortin (DCX) gene product
- cd14183
Location:383 → 650
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001195539.2 → NP_001182468.1 serine/threonine-protein kinase DCLK1 isoform 6
See identical proteins and their annotated locations for NP_001182468.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6, also known as DCLK-short-C or DCK-beta2-R) is produced from the 3' promoter. It lacks several 5' exons but has an alternate 5' exon, and has an additional in-frame segment in the CDS, as compared to variant 5. The resulting isoform (6) has a shorter and different N-terminus, and lacks doublecortin domains but has an additional Arg-rich segment, as compared to isoform 5.
- Source sequence(s)
-
AC115945, AF155821, AK032424, BF467198, BY123015
- Consensus CDS
-
CCDS79909.1
- UniProtKB/TrEMBL
- A0A0G2JE54, Q8CCN4
- Related
- ENSMUSP00000143016.2, ENSMUST00000198437.5
- Conserved Domains (2) summary
-
- smart00220
Location:99 → 356
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cd14183
Location:92 → 359
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001195540.2 → NP_001182469.1 serine/threonine-protein kinase DCLK1 isoform 7
See identical proteins and their annotated locations for NP_001182469.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) is produced from the 3' promoter. It shares only one exon with variant 5, and encodes a 56 aa isoform [7, also known as ania-4, or CARP (CaMK-related peptide)], which mainly consists of the serine/proline-rich domain.
- Source sequence(s)
-
AC115945, BY126617
- Consensus CDS
-
CCDS79908.1
- UniProtKB/TrEMBL
-
A8IP62
- Related
- ENSMUSP00000142698.2, ENSMUST00000199585.5
-
NM_001357466.1 → NP_001344395.1 serine/threonine-protein kinase DCLK1 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC104099, AC111132, AC115945, BF467198
- UniProtKB/TrEMBL
-
Q8CHG1
- Conserved Domains (2) summary
-
- smart00537
Location:52 → 142
- DCX; Domain in the Doublecortin (DCX) gene product
- cd14183
Location:383 → 650
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001357468.1 → NP_001344397.1 serine/threonine-protein kinase DCLK1 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC115945, BF467198
- UniProtKB/TrEMBL
-
A0A0G2JGH1
- Conserved Domains (1) summary
-
- cd14183
Location:92 → 359
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001357469.1 → NP_001344398.1 serine/threonine-protein kinase DCLK1 isoform 10
Status: REVIEWED
- Source sequence(s)
-
AC104099, AC111132, AC115945, BF467198
- UniProtKB/TrEMBL
-
Q8CHG1
- Conserved Domains (2) summary
-
- smart00537
Location:52 → 142
- DCX; Domain in the Doublecortin (DCX) gene product
- cd14183
Location:399 → 666
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001357475.1 → NP_001344404.1 serine/threonine-protein kinase DCLK1 isoform 11
Status: REVIEWED
- Source sequence(s)
-
AC104099, AC111132, AC115945, BF467198
- Consensus CDS
-
CCDS89626.1
- UniProtKB/TrEMBL
- A0A0G2JGQ6, Q8CHG1
- Related
- ENSMUSP00000143659.2, ENSMUST00000196745.5
- Conserved Domains (2) summary
-
- smart00537
Location:52 → 142
- DCX; Domain in the Doublecortin (DCX) gene product
- cd14183
Location:383 → 649
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_001357476.1 → NP_001344405.1 serine/threonine-protein kinase DCLK1 isoform 12
Status: REVIEWED
- Source sequence(s)
-
AC115945, BF467198
- Consensus CDS
-
CCDS89627.1
- UniProtKB/TrEMBL
- A0A0G2JGH1, Q1EDH1
- Related
- ENSMUSP00000143507.2, ENSMUST00000199702.5
- Conserved Domains (1) summary
-
- cd14183
Location:75 → 342
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
NM_019978.4 → NP_064362.1 serine/threonine-protein kinase DCLK1 isoform 1
See identical proteins and their annotated locations for NP_064362.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, also known as DCLK-long-C, DCK-alpha2-R) is produced from the 5' promoter. It has an additional in-frame segment in the CDS, as compared to variant 5. The resulting isoform (1) is the longest isoform which includes an Arg-rich domain, in addition to two doublecortin domains, a serine/proline-rich domain and a protein kinase domain, as compared to isoform 5.
- Source sequence(s)
-
AC111132, AC115945, AF155819, BF467198
- Consensus CDS
-
CCDS17359.1
- UniProtKB/Swiss-Prot
- Q6P207, Q9JLM8
- UniProtKB/TrEMBL
-
Q8CHG1
- Related
- ENSMUSP00000050034.8, ENSMUST00000054237.14
- Conserved Domains (3) summary
-
- smart00220
Location:406 → 663
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- smart00537
Location:52 → 142
- DCX; Domain in the Doublecortin (DCX) gene product
- cd14183
Location:399 → 666
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000069.7 Reference GRCm39 C57BL/6J
- Range
-
55149724..55446489
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017319447.3 → XP_017174936.1 serine/threonine-protein kinase DCLK1 isoform X1
- UniProtKB/TrEMBL
-
Q8CHG1
- Conserved Domains (3) summary
-
- cd14183
Location:399 → 666
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
- cd17069
Location:182 → 265
- DCX2; Dublecortin-like domain 2
- cd17140
Location:55 → 143
- DCX1_DCLK1; Dublecortin-like domain 1 found in doublecortin-like kinase 1 (DCLK1)
-
XM_036162883.1 → XP_036018776.1 serine/threonine-protein kinase DCLK1 isoform X8
- UniProtKB/TrEMBL
- Q3UGP0, Q80VB6, Q8VDT3
- Conserved Domains (2) summary
-
- cd17069
Location:182 → 265
- DCX2; Dublecortin-like domain 2
- cd17140
Location:55 → 143
- DCX1_DCLK1; Dublecortin-like domain 1 found in doublecortin-like kinase 1 (DCLK1)
-
XM_006500983.5 → XP_006501046.1 serine/threonine-protein kinase DCLK1 isoform X8
See identical proteins and their annotated locations for XP_006501046.1
- UniProtKB/TrEMBL
- Q3UGP0, Q80VB6, Q8VDT3
- Conserved Domains (2) summary
-
- cd17069
Location:182 → 265
- DCX2; Dublecortin-like domain 2
- cd17140
Location:55 → 143
- DCX1_DCLK1; Dublecortin-like domain 1 found in doublecortin-like kinase 1 (DCLK1)
-
XM_006500982.3 → XP_006501045.1 serine/threonine-protein kinase DCLK1 isoform X7
See identical proteins and their annotated locations for XP_006501045.1
- UniProtKB/TrEMBL
- Q3UGP0, Q8BRN4, Q8VDT3
- Conserved Domains (2) summary
-
- cd17069
Location:182 → 265
- DCX2; Dublecortin-like domain 2
- cd17140
Location:55 → 143
- DCX1_DCLK1; Dublecortin-like domain 1 found in doublecortin-like kinase 1 (DCLK1)
-
XM_030252412.2 → XP_030108272.1 serine/threonine-protein kinase DCLK1 isoform X6
- UniProtKB/TrEMBL
-
A0A0G2JGH1
- Conserved Domains (1) summary
-
- cd14183
Location:42 → 309
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
XM_006500981.5 → XP_006501044.1 serine/threonine-protein kinase DCLK1 isoform X2
See identical proteins and their annotated locations for XP_006501044.1
- UniProtKB/TrEMBL
-
A0A0G2JE54
- Conserved Domains (1) summary
-
- cd14183
Location:58 → 325
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
XM_030252411.2 → XP_030108271.1 serine/threonine-protein kinase DCLK1 isoform X4
- UniProtKB/TrEMBL
-
A0A0G2JE54
- Conserved Domains (1) summary
-
- cd14183
Location:42 → 309
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
XM_036162882.1 → XP_036018775.1 serine/threonine-protein kinase DCLK1 isoform X5
- UniProtKB/TrEMBL
-
A0A0G2JE54
- Conserved Domains (1) summary
-
- cd14183
Location:41 → 308
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
-
XM_036162881.1 → XP_036018774.1 serine/threonine-protein kinase DCLK1 isoform X3
- UniProtKB/TrEMBL
-
A0A0G2JE54
- Conserved Domains (1) summary
-
- cd14183
Location:57 → 324
- STKc_DCKL1; Catalytic domain of the Serine/Threonine Kinase, Doublecortin-like kinase 1 (also called Doublecortin-like and CAM kinase-like 1)
RNA
-
XR_004941275.1 RNA Sequence
-
XR_004941274.1 RNA Sequence