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    Hcf Host cell factor [ Eupeodes corollae ]

    Gene ID: 129953389, updated on 24-May-2024

    Summary

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    Gene symbol
    Hcf
    Gene description
    Host cell factor
    See related
    EnsemblRapid:ENSEEAG00000020214
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eupeodes corollae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Eupeodes; Eupeodes
    Orthologs
    fruit fly all
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    Genomic context

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    See Hcf in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_05 current idEupCoro1.1 (GCF_945859685.1) X NC_079150.1 (4658962..4674772)

    Chromosome X - NC_079150.1Genomic Context describing neighboring genes Neighboring gene Calcium/calmodulin-dependent protein kinase I Neighboring gene uncharacterized LOC129953403 Neighboring gene inactive rhomboid protein 1 Neighboring gene Carnitine palmitoyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_079150.1 Chromosome X Reference idEupCoro1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    host cell factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_945859685.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idEupCoro1.1

    Genomic

    1. NC_079150.1 Reference idEupCoro1.1

      Range
      4658962..4674772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056066545.1 → XP_055922520.1  host cell factor isoform X1

      Related
      ENSEEAP00000024481.1, ENSEEAT00000030712.1

    2. XM_056066546.1 → XP_055922521.1  host cell factor isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases