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    LOC129714207 calpain-3-like [ Leucoraja erinaceus (little skate) ]

    Gene ID: 129714207, updated on 12-Oct-2024

    Summary

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    Gene symbol
    LOC129714207
    Gene description
    calpain-3-like
    See related
    EnsemblRapid:ENSLERG00010004925
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Leucoraja erinaceus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
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    Genomic context

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    See LOC129714207 in Genome Data Viewer
    Location:
    chromosome: 38
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 38 NC_073414.1 (6748677..6784335)

    Chromosome 38 - NC_073414.1Genomic Context describing neighboring genes Neighboring gene mucin-19-like Neighboring gene uncharacterized LOC129714206 Neighboring gene FBJ murine osteosarcoma viral oncogene homolog B Neighboring gene vascular endothelial growth factor A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_073414.1 Chromosome 38 Reference Leri_hhj_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Leri_hhj_1 Primary Assembly

    Genomic

    1. NC_073414.1 Reference Leri_hhj_1 Primary Assembly

      Range
      6748677..6784335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055663731.1 → XP_055519706.1  calpain-3-like isoform X1

      Related
      ENSLERP00010005894.1, ENSLERT00010010519.1

    2. XM_055663733.1 → XP_055519708.1  calpain-3-like isoform X2

    3. XM_055663734.1 → XP_055519709.1  calpain-3-like isoform X3

    Nucleotide Protein
    Heading Accession and Version

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