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    tpi1b triosephosphate isomerase 1b [ Anoplopoma fimbria (sablefish) ]

    Gene ID: 129109571, updated on 26-Mar-2024

    Summary

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    Gene symbol
    tpi1b
    Gene description
    triosephosphate isomerase 1b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anoplopoma fimbria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
    Orthologs
    human zebrafish all
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    Genomic context

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    See tpi1b in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 20 NC_072468.1 (17885302..17890225, complement)

    Chromosome 20 - NC_072468.1Genomic Context describing neighboring genes Neighboring gene atrophin 1 Neighboring gene zinc finger and SCAN domain-containing protein 2-like Neighboring gene U7 small nuclear RNA Neighboring gene lysophosphatidylcholine acyltransferase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_072468.1 Chromosome 20 Reference Afim_UVic_2022

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables triose-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerol catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    triosephosphate isomerase B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Afim_UVic_2022

    Genomic

    1. NC_072468.1 Reference Afim_UVic_2022

      Range
      17885302..17890225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054621672.1 → XP_054477647.1  triosephosphate isomerase B

    Nucleotide Protein
    Heading Accession and Version

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