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    sh3rf1 SH3 domain containing ring finger 1 [ Anoplopoma fimbria (sablefish) ]

    Gene ID: 129094990, updated on 26-Mar-2024

    Summary

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    Gene symbol
    sh3rf1
    Gene description
    SH3 domain containing ring finger 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anoplopoma fimbria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
    Orthologs
    human zebrafish all
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    Genomic context

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    See sh3rf1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 8 NC_072456.1 (26965660..27014022, complement)

    Chromosome 8 - NC_072456.1Genomic Context describing neighboring genes Neighboring gene palladin, cytoskeletal associated protein Neighboring gene carbonyl reductase 4 Neighboring gene NIMA-related kinase 1 Neighboring gene F-box and leucine-rich repeat protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_072456.1 Chromosome 8 Reference Afim_UVic_2022

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SH3RF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Afim_UVic_2022

    Genomic

    1. NC_072456.1 Reference Afim_UVic_2022

      Range
      26965660..27014022 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054603326.1 → XP_054459301.1  E3 ubiquitin-protein ligase SH3RF1

    Nucleotide Protein
    Heading Accession and Version

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