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    SGPP1 sphingosine-1-phosphate phosphatase 1 [ Podarcis raffonei (Aeolian wall lizard) ]

    Gene ID: 128422385, updated on 25-Mar-2024

    Summary

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    Gene symbol
    SGPP1
    Gene description
    sphingosine-1-phosphate phosphatase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Podarcis raffonei
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
    Orthologs
    human mouse all
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    Genomic context

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    See SGPP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_02 current rPodRaf1.pri (GCF_027172205.1) 1 NC_070602.1 (10405754..10423566, complement)

    Chromosome 1 - NC_070602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128422828 Neighboring gene 5S ribosomal RNA Neighboring gene WD repeat domain 89 Neighboring gene spectrin repeat containing nuclear envelope protein 2 Neighboring gene estrogen receptor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_070602.1 Chromosome 1 Reference rPodRaf1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingosine-1-phosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingosine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingosine-1-phosphate phosphatase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027172205.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rPodRaf1.pri

    Genomic

    1. NC_070602.1 Reference rPodRaf1.pri

      Range
      10405754..10423566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053406461.1 → XP_053262436.1  sphingosine-1-phosphate phosphatase 1

    2. XM_053406380.1 → XP_053262355.1  sphingosine-1-phosphate phosphatase 1

    Nucleotide Protein
    Heading Accession and Version

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