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    HCFC1 host cell factor C1 [ Podarcis raffonei (Aeolian wall lizard) ]

    Gene ID: 128405226, updated on 25-Mar-2024

    Summary

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    Gene symbol
    HCFC1
    Gene description
    host cell factor C1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Podarcis raffonei
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
    Orthologs
    human mouse all
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    Genomic context

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    See HCFC1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2023_02 current rPodRaf1.pri (GCF_027172205.1) 17 NC_070618.1 (38976044..39001117, complement)

    Chromosome 17 - NC_070618.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene ras-related protein Rab-7a-like Neighboring gene microsomal glutathione S-transferase 3-like Neighboring gene transmembrane protein 187

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_070618.1 Chromosome 17 Reference rPodRaf1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    host cell factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027172205.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rPodRaf1.pri

    Genomic

    1. NC_070618.1 Reference rPodRaf1.pri

      Range
      38976044..39001117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053371639.1 → XP_053227614.1  host cell factor 1 isoform X2

    2. XM_053371638.1 → XP_053227613.1  host cell factor 1 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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