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    ccl20l C-C motif chemokine 20-like [ Carassius gibelio (silver crucian carp) ]

    Gene ID: 128023782, updated on 28-May-2024

    Summary

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    Gene symbol
    ccl20l
    Gene description
    C-C motif chemokine 20-like
    See related
    EnsemblRapid:ENSCGBG00020037002
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius gibelio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
    Orthologs
    zebrafish all
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    Genomic context

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    See ccl20l in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) A2 NC_068372.1 (23897678..23899522)

    Chromosome A2 - NC_068372.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 36a Neighboring gene eph receptor A4a Neighboring gene uncharacterized LOC128023766 Neighboring gene uncharacterized LOC127934000 Neighboring gene monocyte chemotactic protein 1B-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_068372.1 Chromosome A2 Reference carGib1.2-hapl.c Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR chemokine receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chemokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to interleukin-1 IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to tumor necrosis factor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to type II interferon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lymphocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neutrophil chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of ERK1 and ERK2 cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-C motif chemokine 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference carGib1.2-hapl.c Primary Assembly

    Genomic

    1. NC_068372.1 Reference carGib1.2-hapl.c Primary Assembly

      Range
      23897678..23899522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052610676.1 → XP_052466636.1  C-C motif chemokine 20

      Related
      ENSCGBP00020037053.1, ENSCGBT00020061832.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases