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    slc6a4a solute carrier family 6 member 4a [ Labeo rohita (rohu) ]

    Gene ID: 127177165, updated on 12-Sep-2024

    Summary

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    Gene symbol
    slc6a4a
    Gene description
    solute carrier family 6 member 4a
    See related
    EnsemblRapid:ENSLROG00010024899
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Labeo rohita
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
    Orthologs
    zebrafish all
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    Genomic context

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    See slc6a4a in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 15 NC_066883.1 (25439632..25458453, complement)

    Chromosome 15 - NC_066883.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 13B Neighboring gene slingshot protein phosphatase 2a Neighboring gene bleomycin hydrolase Neighboring gene NOVA alternative splicing regulator 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066883.1 Chromosome 15 Reference IGBB_LRoh.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serotonin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serotonin:sodium:chloride symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in serotonin uptake IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier family 6 member 4a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IGBB_LRoh.1.0 Primary Assembly

    Genomic

    1. NC_066883.1 Reference IGBB_LRoh.1.0 Primary Assembly

      Range
      25439632..25458453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051129266.1 → XP_050985223.1  solute carrier family 6 member 4a isoform X2

    2. XM_051129265.1 → XP_050985222.1  solute carrier family 6 member 4a isoform X2

      Related
      ENSLROP00010049876.1, ENSLROT00010054526.1

    3. XM_051129263.1 → XP_050985220.1  solute carrier family 6 member 4a isoform X1

      Related
      ENSLROP00010049880.1, ENSLROT00010054529.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases