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    orf408 putative regulatory protein, deoR family [ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ]

    Gene ID: 1252900, updated on 6-Oct-2023

    Summary

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    Gene symbol
    orf408
    Gene description
    putative regulatory protein, deoR family
    Locus tag
    STM1382
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (strain: LT2, serovar: Typhimurium, sub-species: enterica, culture-collection: ATCC:700720, culture-collection: SGSC:1412, type-material: type strain of Salmonella enterica)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella
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    Genomic context

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    Sequence:
    NC_003197.2 (1464797..1466030, complement)

    NC_003197.2Genomic Context describing neighboring genes Neighboring gene putative hydrolase or acyltransferase Neighboring gene putative cytoplasmic protein Neighboring gene tetrathionate reductase complex, subunit A Neighboring gene tetrathionate reductase complex, subunit C Neighboring gene tetrathionate reductase complex, subunit B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003197.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. McClelland M, et al. Nature, 2001 Oct 25. PMID 11677609

    GeneRIFs: Gene References Into Functions

    General gene information

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    regulatory

    • Loc: c1466030-1466025 regulatory_class = ribosome_binding_site

    General protein information

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    Preferred Names
    putative regulatory protein, deoR family
    NP_460347.1
    • ORF 408 (gi|4456874)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003197.2 Reference assembly

      Range
      1464797..1466030 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_460347.1 putative regulatory protein, deoR family [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

      See identical proteins and their annotated locations for NP_460347.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5W3SSV7, A0A5Z0TUA4, A0A626FSI7, A0A711VJJ6, A0A722KVK3, A0A758YHS7, A0A759NN46
      Conserved Domains (2) summary
      COG1349
      Location:1 → 83
      GlpR; DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]
      cd01174
      Location:98 → 388
      ribokinase; Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides ...
    Nucleotide Protein
    Heading Accession and Version

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